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D
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F
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G
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Y
A
accessible_organisms() (in module apollo)
,
[1]
activate_user() (apollo.users.UsersClient method)
add_attribute() (apollo.annotations.AnnotationsClient method)
add_comment() (apollo.annotations.AnnotationsClient method)
(apollo.cannedcomments.CannedCommentsClient method)
add_dbxref() (apollo.annotations.AnnotationsClient method)
add_feature() (apollo.annotations.AnnotationsClient method)
add_features() (apollo.annotations.AnnotationsClient method)
add_key() (apollo.cannedkeys.CannedKeysClient method)
add_organism() (apollo.organisms.OrganismsClient method)
(apollo.remote.RemoteClient method)
add_property_to_feature() (in module apollo.util)
add_status() (apollo.status.StatusClient method)
add_to_group() (apollo.users.UsersClient method)
add_track() (apollo.remote.RemoteClient method)
add_transcript() (apollo.annotations.AnnotationsClient method)
add_transcripts() (apollo.annotations.AnnotationsClient method)
add_value() (apollo.cannedvalues.CannedValuesClient method)
AnnotationsClient (class in apollo.annotations)
APIErrorResponseException
apollo (module)
,
[1]
apollo.annotations (module)
apollo.cannedcomments (module)
apollo.cannedkeys (module)
apollo.cannedvalues (module)
apollo.client (module)
apollo.decorators (module)
apollo.exceptions (module)
apollo.groups (module)
apollo.io (module)
apollo.metrics (module)
apollo.organisms (module)
apollo.remote (module)
apollo.status (module)
apollo.users (module)
apollo.util (module)
ApolloInstance (class in apollo)
,
[1]
AssertAdmin() (in module apollo.util)
AssertUser() (in module apollo.util)
C
CannedCommentsClient (class in apollo.cannedcomments)
CannedKeysClient (class in apollo.cannedkeys)
CannedValuesClient (class in apollo.cannedvalues)
Client (class in apollo.client)
CLIENT_BASE (apollo.annotations.AnnotationsClient attribute)
(apollo.cannedcomments.CannedCommentsClient attribute)
(apollo.cannedkeys.CannedKeysClient attribute)
(apollo.cannedvalues.CannedValuesClient attribute)
(apollo.client.Client attribute)
(apollo.groups.GroupsClient attribute)
(apollo.io.IOClient attribute)
(apollo.metrics.MetricsClient attribute)
(apollo.organisms.OrganismsClient attribute)
(apollo.remote.RemoteClient attribute)
(apollo.status.StatusClient attribute)
(apollo.users.UsersClient attribute)
CnOrGuess() (in module apollo.util)
create_group() (apollo.groups.GroupsClient method)
create_user() (apollo.users.UsersClient method)
D
delete_attribute() (apollo.annotations.AnnotationsClient method)
delete_comment() (apollo.cannedcomments.CannedCommentsClient method)
delete_dbxref() (apollo.annotations.AnnotationsClient method)
delete_feature() (apollo.annotations.AnnotationsClient method)
delete_features() (apollo.organisms.OrganismsClient method)
delete_group() (apollo.groups.GroupsClient method)
delete_key() (apollo.cannedkeys.CannedKeysClient method)
delete_organism() (apollo.organisms.OrganismsClient method)
(apollo.remote.RemoteClient method)
delete_sequence_alteration() (apollo.annotations.AnnotationsClient method)
delete_status() (apollo.status.StatusClient method)
delete_track() (apollo.remote.RemoteClient method)
delete_user() (apollo.users.UsersClient method)
delete_value() (apollo.cannedvalues.CannedValuesClient method)
download() (apollo.io.IOClient method)
duplicate_transcript() (apollo.annotations.AnnotationsClient method)
F
fakeTrans (class in apollo)
,
[1]
FEATURE (apollo.annotations.FeatureType attribute)
features_to_apollo_schema() (in module apollo.util)
features_to_feature_schema() (in module apollo.util)
FeatureType (class in apollo.annotations)
flip_strand() (apollo.annotations.AnnotationsClient method)
G
galaxy_list_groups() (in module apollo)
,
[1]
galaxy_list_orgs() (in module apollo)
,
[1]
get() (apollo.client.Client method)
get_comments() (apollo.annotations.AnnotationsClient method)
(apollo.cannedcomments.CannedCommentsClient method)
get_feature_sequence() (apollo.annotations.AnnotationsClient method)
get_features() (apollo.annotations.AnnotationsClient method)
get_gff3() (apollo.annotations.AnnotationsClient method)
get_group_admin() (apollo.groups.GroupsClient method)
get_group_creator() (apollo.groups.GroupsClient method)
get_groups() (apollo.groups.GroupsClient method)
get_keys() (apollo.cannedkeys.CannedKeysClient method)
get_metrics() (apollo.metrics.MetricsClient method)
get_organism_creator() (apollo.organisms.OrganismsClient method)
get_organism_permissions() (apollo.groups.GroupsClient method)
(apollo.users.UsersClient method)
get_organisms() (apollo.organisms.OrganismsClient method)
get_search_tools() (apollo.annotations.AnnotationsClient method)
get_sequence_alterations() (apollo.annotations.AnnotationsClient method)
get_sequences() (apollo.organisms.OrganismsClient method)
get_statuses() (apollo.status.StatusClient method)
get_user() (apollo.fakeTrans method)
,
[1]
get_user_creator() (apollo.users.UsersClient method)
get_users() (apollo.users.UsersClient method)
get_values() (apollo.cannedvalues.CannedValuesClient method)
GroupsClient (class in apollo.groups)
GuessCn() (in module apollo.util)
GuessOrg() (in module apollo.util)
I
inactivate_user() (apollo.users.UsersClient method)
IOClient (class in apollo.io)
L
load_gff3() (apollo.annotations.AnnotationsClient method)
load_legacy_gff3() (apollo.annotations.AnnotationsClient method)
M
merge_exons() (apollo.annotations.AnnotationsClient method)
MetricsClient (class in apollo.metrics)
O
obj (class in apollo)
,
[1]
OrganismsClient (class in apollo.organisms)
OrgOrGuess() (in module apollo.util)
P
post() (apollo.client.Client method)
R
RemoteClient (class in apollo.remote)
remove_from_group() (apollo.users.UsersClient method)
require_user() (in module apollo)
,
[1]
retry() (in module apollo.util)
S
set_boundaries() (apollo.annotations.AnnotationsClient method)
set_description() (apollo.annotations.AnnotationsClient method)
set_logging_level() (in module apollo)
,
[1]
set_longest_orf() (apollo.annotations.AnnotationsClient method)
set_name() (apollo.annotations.AnnotationsClient method)
set_readthrough_stop_codon() (apollo.annotations.AnnotationsClient method)
set_sequence() (apollo.annotations.AnnotationsClient method)
set_status() (apollo.annotations.AnnotationsClient method)
set_symbol() (apollo.annotations.AnnotationsClient method)
set_translation_end() (apollo.annotations.AnnotationsClient method)
set_translation_start() (apollo.annotations.AnnotationsClient method)
show_comment() (apollo.cannedcomments.CannedCommentsClient method)
show_group() (apollo.groups.GroupsClient method)
show_key() (apollo.cannedkeys.CannedKeysClient method)
show_organism() (apollo.organisms.OrganismsClient method)
show_status() (apollo.status.StatusClient method)
show_user() (apollo.users.UsersClient method)
show_value() (apollo.cannedvalues.CannedValuesClient method)
StatusClient (class in apollo.status)
T
TRANSCRIPT (apollo.annotations.FeatureType attribute)
U
UnknownUserException
update_attribute() (apollo.annotations.AnnotationsClient method)
update_comment() (apollo.cannedcomments.CannedCommentsClient method)
update_dbxref() (apollo.annotations.AnnotationsClient method)
update_group() (apollo.groups.GroupsClient method)
update_group_admin() (apollo.groups.GroupsClient method)
update_key() (apollo.cannedkeys.CannedKeysClient method)
update_membership() (apollo.groups.GroupsClient method)
update_metadata() (apollo.organisms.OrganismsClient method)
update_organism() (apollo.organisms.OrganismsClient method)
(apollo.remote.RemoteClient method)
update_organism_permissions() (apollo.groups.GroupsClient method)
(apollo.users.UsersClient method)
update_status() (apollo.status.StatusClient method)
update_track() (apollo.remote.RemoteClient method)
update_user() (apollo.users.UsersClient method)
update_value() (apollo.cannedvalues.CannedValuesClient method)
UsersClient (class in apollo.users)
W
WAAuth() (in module apollo.util)
write_downloadable() (apollo.io.IOClient method)
write_text() (apollo.io.IOClient method)
Y
yieldApolloData() (in module apollo.util)
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