io¶
This section is auto-generated from the help text for the arrow command
io
.
download
command¶
Usage:
arrow io download [OPTIONS] UUID
Help
Download pre-prepared data by UUID
Output
The downloaded content
Options:
--output_format TEXT Output format of the data, either "gzip" or "text"
[default: gzip]
-h, --help Show this message and exit.
write_downloadable
command¶
Usage:
arrow io write_downloadable [OPTIONS] ORGANISM
Help
Prepare a download for an organism
Output
a dictionary containing download information
Options:
--export_type TEXT Export type. Choices: FASTA, GFF3, VCF [default: FASTA]
--seq_type TEXT Export selection. Choices: peptide, cds, cdna, genomic
[default: peptide]
--export_format TEXT Export format, either gzip or text [default: text]
--export_gff3_fasta Export reference sequence when exporting GFF3
annotations.
--sequences TEXT Names of references sequences to add (default is all)
--region TEXT Region to export in form sequence:min..max e.g.,
chr3:1001..1034
-h, --help Show this message and exit.
write_text
command¶
Usage:
arrow io write_text [OPTIONS] ORGANISM
Help
[DEPRECATED, use write_downloadable] Download or prepare a download for an organism
Output
the exported data
Options:
--export_type TEXT Export type. Choices: FASTA, GFF3, VCF [default: FASTA]
--seq_type TEXT Export selection. Choices: peptide, cds, cdna, genomic
[default: peptide]
--export_format TEXT Export format, either gzip or text [default: text]
--export_gff3_fasta Export reference sequence when exporting GFF3
annotations.
--sequences TEXT Names of references sequences to add (default is all)
--region TEXT Region to export in form sequence:min..max e.g.,
chr3:1001..1034
-h, --help Show this message and exit.